Identification of cross-reactive single-domain antibodies against serum albumin using next-generation DNA sequencing

Protein Eng Des Sel. 2015 Oct;28(10):379-83. doi: 10.1093/protein/gzv039. Epub 2015 Aug 27.

Abstract

Antibodies that cross-react with multiple isoforms or homologue of a given protein are often desirable, especially in therapeutic applications. Here, we report the identification of several unique, clonally unrelated, single-domain antibodies (sdAbs) that bind to multiple serum albumin orthologues (human, rhesus, rat and mouse) with low-to-medium nanomolar affinity from a llama immunized only with human serum albumin. Using single-round panning of a phage-displayed sdAb library against serum albumins and next-generation DNA sequencing, we were able to predict patterns of sdAb reactivity to the albumins of different species with ∼90% accuracy. We expect this strategy to be generally applicable for identifying cross-reactive sdAbs, particularly when these exist at low frequency and/or are poorly enriched by panning. Moreover, the sdAbs identified here are of potential interest for serum half-life extension of biologics.

Keywords: VHH; next-generation DNA sequencing; phage display; serum albumin; single-domain antibody.

MeSH terms

  • Animals
  • Cross Reactions*
  • High-Throughput Nucleotide Sequencing*
  • Humans
  • Mice
  • Rats
  • Sequence Analysis, DNA*
  • Serum Albumin / immunology*
  • Single-Domain Antibodies / genetics*
  • Single-Domain Antibodies / immunology*

Substances

  • Serum Albumin
  • Single-Domain Antibodies