Chujaibacter soli gen. nov., sp. nov., isolated from soil

J Microbiol. 2015 Sep;53(9):592-7. doi: 10.1007/s12275-015-5136-y. Epub 2015 Aug 27.

Abstract

A Gram-staining-negative, aerobic, non-flagellated, rod-shaped bacterial strain, KIS55-21(T), was isolated from a soil sample from Chuja Island, Jeju Province, Republic of Korea. Strain KIS55-21(T) grew optimally at pH 7.0, at 28-30°C and in the presence of 0% (w/v) NaCl. Neighbor-joining and maximum-likelihood trees based on the 16S rRNA gene sequences revealed that strain KIS55-21(T) fell within the family Xanthomonadaceae and was closely related to Metallibacterium scheffleri DKE(T). Strain KIS55-21(T) exhibited the highest 16S rRNA gene sequence similarity (92.6%) to that of M. scheffleri DKE(T), with similarities of less than 92.0% to those of the genera Dokdonella, Rhodanobacter, Aquimonas, and Frateuria. Strain KIS55-21(T) contained ubiquinone-8 (Q-8) as the predominant ubiquinone, iso-C17:0, summed feature 9 (iso-C17:1 ω9c and/or C16:0 10-methyl), anteiso-C17:0 and C16:0 as the major fatty acids, and phosphatidylethanolamine, aminophospholipid, phosphatidylglycerol, diphosphatidylglycerol, and phosphatidylmonomethylethanolamine as the main polar lipids. The DNA G+C content of strain KIS55-21(T) was 65.9 mol%. Differential phenotypic and chemotaxonomic properties and phylogenetic data of strain KIS55-21(T) demonstrated that this strain is distinguishable from closely related genera within the family Xanthomonadaceae. On the basis of the data presented, strain KIS55-21(T) is considered to represent a novel genus and species, for which the name Chujaibacter soli gen. nov., sp. nov. is proposed. The type strain is KIS55-21(T) (=KACC 16971(T) =DSM 28578(T)).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Typing Techniques
  • Base Composition
  • DNA, Bacterial / genetics
  • Fatty Acids / analysis
  • Genome, Bacterial
  • Phospholipids / analysis
  • Phylogeny
  • RNA, Ribosomal, 16S
  • Republic of Korea
  • Sequence Analysis, DNA
  • Soil Microbiology*
  • Xanthomonadaceae / classification
  • Xanthomonadaceae / genetics*
  • Xanthomonadaceae / growth & development
  • Xanthomonadaceae / isolation & purification*

Substances

  • DNA, Bacterial
  • Fatty Acids
  • Phospholipids
  • RNA, Ribosomal, 16S