Structural Basis for Ca2+-mediated Interaction of the Perforin C2 Domain with Lipid Membranes

J Biol Chem. 2015 Oct 16;290(42):25213-26. doi: 10.1074/jbc.M115.668384. Epub 2015 Aug 25.

Abstract

Natural killer cells and cytotoxic T-lymphocytes deploy perforin and granzymes to kill infected host cells. Perforin, secreted by immune cells, binds target membranes to form pores that deliver pro-apoptotic granzymes into the target cell. A crucial first step in this process is interaction of its C2 domain with target cell membranes, which is a calcium-dependent event. Some aspects of this process are understood, but many molecular details remain unclear. To address this, we investigated the mechanism of Ca(2+) and lipid binding to the C2 domain by NMR spectroscopy and x-ray crystallography. Calcium titrations, together with dodecylphosphocholine micelle experiments, confirmed that multiple Ca(2+) ions bind within the calcium-binding regions, activating perforin with respect to membrane binding. We have also determined the affinities of several of these binding sites and have shown that this interaction causes a significant structural rearrangement in CBR1. Thus, it is proposed that Ca(2+) binding at the weakest affinity site triggers changes in the C2 domain that facilitate its interaction with lipid membranes.

Keywords: NMR; calcium-binding protein; crystal structure; immunology; multisite ligand binding; protein-membrane interaction; x-ray crystallography.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Calcium / metabolism*
  • Crystallography, X-Ray
  • Membrane Lipids / metabolism*
  • Mice
  • Molecular Sequence Data
  • Nuclear Magnetic Resonance, Biomolecular
  • Perforin / chemistry
  • Perforin / genetics
  • Perforin / metabolism*
  • Phosphorylcholine / analogs & derivatives*
  • Phosphorylcholine / metabolism
  • Protein Conformation
  • Sequence Homology, Amino Acid

Substances

  • Membrane Lipids
  • Phosphorylcholine
  • Perforin
  • dodecylphosphocholine
  • Calcium

Associated data

  • PDB/3NSJ
  • PDB/3W56
  • PDB/3W57
  • PDB/4Y1S
  • PDB/4Y1T