Pyranopterin Coordination Controls Molybdenum Electrochemistry in Escherichia coli Nitrate Reductase

J Biol Chem. 2015 Oct 9;290(41):25164-73. doi: 10.1074/jbc.M115.665422. Epub 2015 Aug 21.

Abstract

We test the hypothesis that pyranopterin (PPT) coordination plays a critical role in defining molybdenum active site redox chemistry and reactivity in the mononuclear molybdoenzymes. The molybdenum atom of Escherichia coli nitrate reductase A (NarGHI) is coordinated by two PPT-dithiolene chelates that are defined as proximal and distal based on their proximity to a [4Fe-4S] cluster known as FS0. We examined variants of two sets of residues involved in PPT coordination: (i) those interacting directly or indirectly with the pyran oxygen of the bicyclic distal PPT (NarG-Ser(719), NarG-His(1163), and NarG-His(1184)); and (ii) those involved in bridging the two PPTs and stabilizing the oxidation state of the proximal PPT (NarG-His(1092) and NarG-His(1098)). A S719A variant has essentially no effect on the overall Mo(VI/IV) reduction potential, whereas the H1163A and H1184A variants elicit large effects (ΔEm values of -88 and -36 mV, respectively). Ala variants of His(1092) and His(1098) also elicit large ΔEm values of -143 and -101 mV, respectively. An Arg variant of His(1092) elicits a small ΔEm of +18 mV on the Mo(VI/IV) reduction potential. There is a linear correlation between the molybdenum Em value and both enzyme activity and the ability to support anaerobic respiratory growth on nitrate. These data support a non-innocent role for the PPT moieties in controlling active site metal redox chemistry and catalysis.

Keywords: EPR; charge-transfer; electrochemistry; electron paramagnetic resonance (EPR); electron transfer; molybdenum; nitrate reductase; redox tuning; reductase.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Catalytic Domain
  • Electrochemistry
  • Escherichia coli / enzymology*
  • Models, Molecular
  • Molybdenum / chemistry*
  • Molybdenum / metabolism
  • Mutagenesis, Site-Directed
  • Nitrate Reductase / chemistry*
  • Nitrate Reductase / genetics
  • Nitrate Reductase / metabolism*
  • Oxidation-Reduction
  • Pterins / metabolism*

Substances

  • Pterins
  • pyranopterin
  • Molybdenum
  • Nitrate Reductase

Associated data

  • PDB/1Q16
  • PDB/1R27
  • PDB/1Y5I
  • PDB/1YZ4