The complete mitochondrial genome sequence of Symphysodon discus Heckel (1840)

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2631-2. doi: 10.3109/19401736.2015.1041128. Epub 2015 Aug 18.

Abstract

The complete mitochondrial genome of Symphysodon discus Heckel was 16 544 bp in length, consisting of 22 tRNA genes, 13 protein-coding genes, 2 ribosomal rRNA genes, and a control region or displacement loop (D-loop). With the exception of 8 tRNAs and ND6 genes, the others were encoded on H-strand. The base composition on H-strand was 30.04% C, 28.39% A, 26.49% T and 15.07% G, exhibiting an A + T rich pattern. The codon usage was consistent with the other vertebrate mitochondrial pattern, i.e. start codon is ATG or GTG and stop codons are TAA, TAG or T- -. Stop codon TAG was only found in the ND6. There were 8 regions of gene overlapped with the length of 26 bp in total and 12 intergenic spacer regions (99 bp in total).

Keywords: Genome; Symphysodon discus Heckel; mitochondrial.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Composition / genetics
  • Codon, Initiator / genetics
  • Codon, Terminator / genetics
  • DNA, Mitochondrial / genetics
  • Genome, Mitochondrial / genetics*
  • Perciformes / classification
  • Perciformes / genetics*
  • RNA, Ribosomal / genetics
  • RNA, Transfer / genetics
  • Sequence Analysis, DNA

Substances

  • Codon, Initiator
  • Codon, Terminator
  • DNA, Mitochondrial
  • RNA, Ribosomal
  • RNA, Transfer