Collapse of DNA under alternating electric fields

Phys Rev E Stat Nonlin Soft Matter Phys. 2015 Jul;92(1):012714. doi: 10.1103/PhysRevE.92.012714. Epub 2015 Jul 20.

Abstract

Recent studies have shown that double-stranded DNA can collapse in the presence of a strong electric field. Here we provide an in-depth study of the collapse of DNA under weak confinement in microchannels as a function of buffer strength, driving frequency, applied electric-field strength, and molecule size. We find that the critical electric field at which DNA molecules collapse (tens of kV/m) is strongly dependent on driving frequency (100-800 Hz) and molecular size (20-160 kbp), and weakly dependent on the ionic strength (8-60 mM). We argue that an apparent stretching at very high electric fields is an artifact of the finite frame time of video microscopy.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • DNA / chemistry*
  • DNA Contamination*
  • Electromagnetic Phenomena*
  • Ions / chemistry
  • Microscopy, Fluorescence
  • Video Recording

Substances

  • Ions
  • DNA