2D and 3D crystallization of the wild-type IIC domain of the glucose PTS transporter from Escherichia coli

J Struct Biol. 2015 Sep;191(3):376-80. doi: 10.1016/j.jsb.2015.08.003. Epub 2015 Aug 8.

Abstract

The bacterial phosphoenolpyruvate: sugar phosphotransferase system serves the combined uptake and phosphorylation of carbohydrates. This structurally and functionally complex system is composed of several conserved functional units that, through a cascade of phosphorylated intermediates, catalyze the transfer of the phosphate moiety from phosphoenolpyruvate to the substrate, which is bound to the integral membrane domain IIC. The wild-type glucose-specific IIC domain (wt-IIC(glc)) of Escherichia coli was cloned, overexpressed and purified for biochemical and functional characterization. Size-exclusion chromatography and scintillation-proximity binding assays showed that purified wt-IIC(glc) was homogenous and able to bind glucose. Crystallization was pursued following two different approaches: (i) reconstitution of wt-IIC(glc) into a lipid bilayer by detergent removal through dialysis, which yielded tubular 2D crystals, and (ii) vapor-diffusion crystallization of detergent-solubilized wt-IIC(glc), which yielded rhombohedral 3D crystals. Analysis of the 2D crystals by cryo-electron microscopy and the 3D crystals by X-ray diffraction indicated resolutions of better than 6Å and 4Å, respectively. Furthermore, a complete X-ray diffraction data set could be collected and processed to 3.93Å resolution. These 2D and 3D crystals of wt-IIC(glc) lay the foundation for the determination of the first structure of a bacterial glucose-specific IIC domain.

Keywords: Cryo-electron microscopy; Membrane protein; Scintillation-proximity assay; Three-dimensional crystal; Transport protein; Two-dimensional crystal; X-ray crystallography.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacterial Proteins / chemistry*
  • Biological Transport / physiology
  • Crystallization / methods
  • Detergents / chemistry
  • Escherichia coli / chemistry
  • Escherichia coli / metabolism*
  • Glucose / metabolism*
  • Glucose Transport Proteins, Facilitative / chemistry*
  • Membrane Proteins / chemistry
  • Phosphoenolpyruvate Sugar Phosphotransferase System / chemistry
  • Phosphoenolpyruvate Sugar Phosphotransferase System / metabolism
  • Phosphorylation / physiology
  • X-Ray Diffraction / methods

Substances

  • Bacterial Proteins
  • Detergents
  • Glucose Transport Proteins, Facilitative
  • Membrane Proteins
  • Phosphoenolpyruvate Sugar Phosphotransferase System
  • Glucose