Topological sub-structural molecular design (TOPS-MODE): a useful tool to explore key fragments of human A3 adenosine receptor ligands

Mol Divers. 2016 Feb;20(1):55-76. doi: 10.1007/s11030-015-9617-z. Epub 2015 Jul 24.

Abstract

Adenosine regulates tissue function by activating four G-protein-coupled adenosine receptors (ARs). Selective agonists and antagonists for A3 ARs have been investigated for the treatment of a variety of immune disorders, cancer, brain, and heart ischemic conditions. We herein present a QSAR study based on a Topological sub-structural molecular design (TOPS-MODE) approach, intended to predict the A3 ARs of a diverse dataset of 124 (94 training set/ 30 prediction set) adenosine derivatives. The final model showed good fit and predictive capability, displaying 85.1 % of the experimental variance. The TOPS-MODE approach afforded a better understanding and interpretation of the developed model based on the useful information extracted from the analysis of the contribution of different molecular fragments to the affinity.

Keywords: Fragment contributions; QSAR; TOPS-MODE, Ddrug discovery; adenosine receptor agonist.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine A3 Receptor Agonists / chemistry*
  • Adenosine A3 Receptor Agonists / pharmacology
  • Adenosine A3 Receptor Antagonists / chemistry*
  • Adenosine A3 Receptor Antagonists / pharmacology
  • Computational Biology / methods*
  • Drug Discovery
  • Humans
  • Models, Molecular
  • Molecular Structure
  • Protein Binding
  • Quantitative Structure-Activity Relationship
  • Receptor, Adenosine A3 / chemistry
  • Receptor, Adenosine A3 / metabolism*

Substances

  • Adenosine A3 Receptor Agonists
  • Adenosine A3 Receptor Antagonists
  • Receptor, Adenosine A3