Characteristic conformation of Mosher's amide elucidated using the cambridge structural database

Molecules. 2015 Jul 16;20(7):12880-900. doi: 10.3390/molecules200712880.

Abstract

Conformations of the crystalline 3,3,3-trifluoro-2-methoxy-2-phenylpropanamide derivatives (MTPA amides) deposited in the Cambridge Structural Database (CSD) were examined statistically as Racid-enantiomers. The majority of dihedral angles (48/58, ca. 83%) of the amide carbonyl groups and the trifluoromethyl groups ranged from -30° to 0° with an average angle θ1 of -13°. The other conformational properties were also clarified: (1) one of the fluorine atoms was antiperiplanar (ap) to the amide carbonyl group, forming a staggered conformation; (2) the MTPA amides prepared from primary amines showed a Z form in amide moieties; (3) in the case of the MTPA amide prepared from a primary amine possessing secondary alkyl groups (i.e., Mosher-type MTPA amide), the dihedral angles between the methine groups and the carbonyl groups were syn and indicative of a moderate conformational flexibility; (4) the phenyl plane was inclined from the O-Cchiral bond of the methoxy moiety with an average dihedral angle θ2 of +21°; (5) the methyl group of the methoxy moiety was ap to the ipso-carbon atom of the phenyl group.

Keywords: MTPA; Mosher’s method; chiral recognition; chirality; crystal engineering.

MeSH terms

  • Amides / chemistry*
  • Crystallography, X-Ray
  • Databases, Chemical
  • Models, Molecular
  • Molecular Conformation
  • Phenylacetates / chemistry*

Substances

  • Amides
  • Phenylacetates
  • Mosher's acid