How a Small Double-Stranded Trick Can Mislead Sanger Sequencing

J Biomol Tech. 2015 Sep;26(3):80-2. doi: 10.7171/jbt.15-2603-004.

Abstract

Notwithstanding the arrival of "third-generation sequencing," Sanger sequencing, developed in 1980, is still the most accurate and used method for sequencing, although on a smaller scale. It is a powerful resource for studying sequences and discovering polymorphisms and genes, as well as regulatory elements. There has already been described a wide range of possible problems with this very sensitive and accurate technology. Here, we show that a specific event, related to genomes rich in repetitive sequences, can mislead operators working with Sanger sequencing.

Keywords: chromatograms; inverted repeats; problems.

MeSH terms

  • Artifacts*
  • DNA, Plant / genetics
  • Genome
  • Inverted Repeat Sequences
  • Repetitive Sequences, Nucleic Acid
  • Sequence Analysis, DNA*
  • Triticum / genetics

Substances

  • DNA, Plant