Development of a Novel Tetravalent Synthetic Peptide That Binds to Phosphatidic Acid

PLoS One. 2015 Jul 6;10(7):e0131668. doi: 10.1371/journal.pone.0131668. eCollection 2015.

Abstract

We employed a multivalent peptide-library screening technique to identify a peptide motif that binds to phosphatidic acid (PA), but not to other phospholipids such as phosphatidylcholine (PC), phosphatidylethanolamine (PE), and phosphatidylserine (PS). A tetravalent peptide with the sequence motif of MARWHRHHH, designated as PAB-TP (phosphatidic acid-binding tetravalent peptide), was shown to bind as low as 1 mol% of PA in the bilayer membrane composed of PC and cholesterol. Kinetic analysis of the interaction between PAB-TP and the membranes containing 10 mol% of PA showed that PAB-TP associated with PA with a low dissociation constant of KD = 38 ± 5 nM. Coexistence of cholesterol or PE with PA in the membrane enhanced the PAB-TP binding to PA by increasing the ionization of the phosphomonoester head group as well as by changing the microenvironment of PA molecules in the membrane. Amino acid replacement analysis demonstrated that the tryptophan residue at position 4 of PAB-TP was involved in the interaction with PA. Furthermore, a series of amino acid substitutions at positions 5 to 9 of PAB-TP revealed the involvement of consecutive histidine and arginine residues in recognition of the phosphomonoester head group of PA. Our results demonstrate that the recognition of PA by PAB-TP is achieved by a combination of hydrophobic, electrostatic and hydrogen-bond interactions, and that the tetravalent structure of PAB-TP contributes to the high affinity binding to PA in the membrane. The novel PA-binding tetravalent peptide PAB-TP will provide insight into the molecular mechanism underlying the recognition of PA by PA-binding proteins that are involved in various cellular events.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution / physiology
  • Hydrogen Bonding
  • Kinetics
  • Membranes / metabolism
  • Peptide Library
  • Peptides / metabolism*
  • Phosphatidic Acids / metabolism*
  • Static Electricity
  • Tryptophan / metabolism

Substances

  • Peptide Library
  • Peptides
  • Phosphatidic Acids
  • Tryptophan

Grants and funding

This work was supported in part by a Grant-in-Aid for Scientific Research, a Grant-in-Aid for Scientific Research on Innovative Areas, and Grant-in-Aid for Challenging Exploratory Research from The Ministry of Education, Culture, Sports, Science and Technology, Japan (scientific research grants 25293012, 25116714, 25670119 and 15K13741) [http://www.mext.go.jp/english/]. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.