Genotyping of velvet antlers for identification of country of origin using mitochondrial DNA and fluorescence melting curve analysis with locked nucleic acid probes

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Jul;27(4):2641-4. doi: 10.3109/19401736.2015.1041133. Epub 2015 Jun 22.

Abstract

Velvet antlers are used medicinally in Asia and possess various therapeutic effects. Prices are set according to the country of origin, which is unidentifiable to the naked eye, and therefore counterfeiting is prevalent. Additionally, antlers of the Canadian elk, which can generate chronic wasting disease, are prevalently smuggled and distributed in the market. Thus, a method for identifying the country of origin of velvet antlers was developed, using polymorphisms in mitochondrial DNA, fluorescence melting curve analysis and analysis of locked nucleic acids (LNA). This combined method is capable of identifying five genotypes of velvet antlers in a single experiment using two probes. It also has advantages in multiplexing, simplicity and efficiency in genotyping, when compared to real-time PCR or microarrays. The developed method can be used to improve identification rates in the velvet antler market and, by extension, research based on polymorphisms in DNA sequences.

Keywords: Cervus elaphus; chronic wasting disease; country of origin; fluorescence melting curve analysis; locked nucleic acids.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • DNA, Mitochondrial / genetics*
  • Deer / classification
  • Deer / genetics*
  • Genome, Mitochondrial / genetics
  • Genotype
  • Oligonucleotides / genetics*
  • Real-Time Polymerase Chain Reaction

Substances

  • DNA, Mitochondrial
  • Oligonucleotides
  • locked nucleic acid