Protein residue linking in a single spectrum for magic-angle spinning NMR assignment

J Biomol NMR. 2015 Jul;62(3):253-61. doi: 10.1007/s10858-015-9956-1. Epub 2015 Jun 16.

Abstract

Here we introduce a new pulse sequence for resonance assignment that halves the number of data sets required for sequential linking by directly correlating sequential amide resonances in a single diagonal-free spectrum. The method is demonstrated with both microcrystalline and sedimented deuterated proteins spinning at 60 and 111 kHz, and a fully protonated microcrystalline protein spinning at 111 kHz, with as little as 0.5 mg protein sample. We find that amide signals have a low chance of ambiguous linkage, which is further improved by linking in both forward and backward directions. The spectra obtained are amenable to automated resonance assignment using general-purpose software such as UNIO-MATCH.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Nuclear Magnetic Resonance, Biomolecular / methods*
  • Proteins / chemistry*
  • Protons

Substances

  • Proteins
  • Protons