Evaluation of a novel line-probe assay for genotyping-based diagnosis of Mycobacterium tuberculosis in Thailand

Int J Tuberc Lung Dis. 2015 Jul;19(7):817-22. doi: 10.5588/ijtld.14.0311.

Abstract

Setting: The Supranational Tuberculosis Reference Laboratory (NTRL), Bangkok, and Chiangrai Prachanukroh Hospital, Chiangrai, Thailand

Objective: To evaluate the diagnostic performance of newly developed line-probe assay (LiPA) kits in tuberculosis (TB) endemic settings.

Design: LiPA kits were used to evaluate 404 clinical isolates of Mycobacterium species and 163 sputum samples in Thailand.

Results: LiPA kits were able to identify M. tuberculosis, M. avium, M. intracellulare and M. kansasii with 100% sensitivity and specificity when compared with the commercially available AccuProbe assay. Testing of the LiPA kits for their ability to detect mutations in clinical isolates resistant to anti-tuberculosis drugs such as rifampicin, isoniazid, pyrazinamide and fluoroquinolones showed that the assay had very high sensitivity (65.9-100%) and specificity (98.2-100%) compared with drug susceptibility testing and DNA sequencing. LiPA had a sensitivity of 75.0-85.7% and a specificity of 96.4-100% in testing clinical sputum samples.

Conclusion: The novel LiPA kits have high sensitivity and specificity, and may enhance the rapid detection of first- and second-line anti-tuberculosis drug resistance, improving the selection of suitable chemotherapy agents to treat multidrug-resistant and extensively drug-resistant TB.

Publication types

  • Evaluation Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antibiotics, Antitubercular / therapeutic use
  • Extensively Drug-Resistant Tuberculosis / diagnosis*
  • Extensively Drug-Resistant Tuberculosis / drug therapy*
  • Extensively Drug-Resistant Tuberculosis / genetics*
  • Fluoroquinolones / therapeutic use
  • Genotype
  • Humans
  • Isoniazid / therapeutic use
  • Microbial Sensitivity Tests
  • Mutation
  • Mycobacterium tuberculosis / isolation & purification*
  • Pyrazinamide / therapeutic use
  • Reagent Kits, Diagnostic / classification*
  • Rifampin / therapeutic use
  • Sensitivity and Specificity
  • Sputum / microbiology*
  • Thailand

Substances

  • Antibiotics, Antitubercular
  • Fluoroquinolones
  • Reagent Kits, Diagnostic
  • Pyrazinamide
  • Isoniazid
  • Rifampin