Evidence for a Novel Mechanism of Influenza Virus-Induced Type I Interferon Expression by a Defective RNA-Encoded Protein

PLoS Pathog. 2015 May 29;11(5):e1004924. doi: 10.1371/journal.ppat.1004924. eCollection 2015 May.

Abstract

Influenza A virus (IAV) defective RNAs are generated as byproducts of error-prone viral RNA replication. They are commonly derived from the larger segments of the viral genome and harbor deletions of various sizes resulting in the generation of replication incompatible viral particles. Furthermore, small subgenomic RNAs are known to be strong inducers of pattern recognition receptor RIG-I-dependent type I interferon (IFN) responses. The present study identifies a novel IAV-induced defective RNA derived from the PB2 segment of A/Thailand/1(KAN-1)/2004 (H5N1). It encodes a 10 kDa protein (PB2∆) sharing the N-terminal amino acid sequence of the parental PB2 protein followed by frame shift after internal deletion. PB2∆ induces the expression of IFNβ and IFN-stimulated genes by direct interaction with the cellular adapter protein MAVS, thereby reducing viral replication of IFN-sensitive viruses such as IAV or vesicular stomatitis virus. This induction of IFN is completely independent of the defective RNA itself that usually serves as pathogen-associated pattern and thus does not require the cytoplasmic sensor RIG-I. These data suggest that not only defective RNAs, but also some defective RNA-encoded proteins can act immunostimulatory. In this particular case, the KAN-1-induced defective RNA-encoded protein PB2∆ enhances the overwhelming immune response characteristic for highly pathogenic H5N1 viruses, leading to a more severe phenotype in vivo.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Blotting, Northern
  • Blotting, Western
  • Hemagglutination Tests
  • Immunoprecipitation
  • Influenza A virus / physiology*
  • Interferon Type I / genetics
  • Interferon Type I / metabolism*
  • Mice
  • Mice, Inbred BALB C
  • Orthomyxoviridae Infections / metabolism*
  • Orthomyxoviridae Infections / virology
  • RNA, Messenger / genetics
  • RNA, Viral / genetics*
  • RNA-Dependent RNA Polymerase / genetics
  • RNA-Dependent RNA Polymerase / metabolism*
  • Real-Time Polymerase Chain Reaction
  • Reverse Transcriptase Polymerase Chain Reaction
  • Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • Tumor Cells, Cultured
  • Viral Proteins / genetics
  • Viral Proteins / metabolism*
  • Virus Replication

Substances

  • Interferon Type I
  • PB2 protein, Influenzavirus A
  • RNA, Messenger
  • RNA, Viral
  • Viral Proteins
  • RNA-Dependent RNA Polymerase

Grants and funding

This work was supported by different grants of the Deutsche Forschungsgemeinschaft (e.g. Lu477/12-1, SFB1009 B2, Wo554/4-1). The IMV is a member of the FluResearchNet, a German-wide research network on zoonotic influenza. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.