Formation of Poly[d(A-T)2] Specific Z-DNA by a Cationic Porphyrin

Sci Rep. 2015 May 6:5:9943. doi: 10.1038/srep09943.

Abstract

Typical CD spectrum of the right-handed poly[d(A-T)2] was reversed when trans-bis(N-methylpyrimidium-4-yl)diphenyl porphyrin (trans-BMPyP) was bound, suggesting that the helicity of the polynucleotide was reversed to the left-handed form. The formation of the left-handed Z-form poly[d(A-T)2] was confirmed by (31)P NMR, in which a single (31)P peak of B-form poly[d(A-T)2] was split into two peaks, which is similar to the conventional B-Z transition of poly[d(G-C)2] induced by the high ionic strength. The observed B-Z transition is unique for poly[d(A-T)2]. The other polynucleotides, including poly[d(G-C)2], poly(dG)·poly(dC) and poly(dA)·poly(dT) remained as the right-handed form in the presence of the same porphyrin. This observation suggests that the porphyrin array that was formed along the poly[d(A-T)2] provides a template to which left-handed poly[d(A-T)2] is associated with an electrostatic interaction.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Cations
  • DNA, Z-Form / chemistry*
  • Isomerism
  • Models, Chemical
  • Models, Molecular
  • Nucleic Acid Conformation
  • Polydeoxyribonucleotides / chemistry*
  • Porphyrins / chemistry*

Substances

  • Cations
  • DNA, Z-Form
  • Polydeoxyribonucleotides
  • Porphyrins
  • poly(d(A-T))2