Anti-dormant mycobacterial activity and target analysis of nybomycin produced by a marine-derived Streptomyces sp

Bioorg Med Chem. 2015 Jul 1;23(13):3534-41. doi: 10.1016/j.bmc.2015.04.033. Epub 2015 Apr 17.

Abstract

In the course of our search for anti-dormant Mycobacterial substances, nybomycin (1) was re-discovered from the culture broth of a marine-derived Streptomyces sp. on the bioassay-guided separation. Compound 1 showed anti-microbial activity against Mycobacterium smegmatis and Mycobacterium bovis BCG with the MIC of 1.0μg/mL under both actively growing aerobic conditions and dormancy inducing hypoxic conditions. Compound 1 is also effective to Mycobacterium tuberculosis including the clinically isolated strains. The mechanistic analysis indicated that 1 bound to DNA and induces a unique morphological change to mycobacterial bacilli leading the bacterial cell death.

Keywords: Antibiotic; Dormant; Nybomycin; Target identification; Tuberculosis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antitubercular Agents / chemistry
  • Antitubercular Agents / isolation & purification
  • Antitubercular Agents / pharmacology*
  • Aquatic Organisms
  • Cell Culture Techniques
  • Cosmids / chemistry
  • Cosmids / metabolism
  • DNA, Bacterial / antagonists & inhibitors*
  • DNA, Bacterial / chemistry
  • Drug Resistance, Bacterial / genetics
  • Microbial Sensitivity Tests
  • Microbial Viability / drug effects
  • Mycobacterium bovis / drug effects
  • Mycobacterium bovis / genetics
  • Mycobacterium bovis / metabolism
  • Mycobacterium bovis / ultrastructure
  • Mycobacterium smegmatis / drug effects
  • Mycobacterium smegmatis / genetics
  • Mycobacterium smegmatis / metabolism
  • Mycobacterium smegmatis / ultrastructure
  • Mycobacterium tuberculosis / drug effects*
  • Mycobacterium tuberculosis / genetics
  • Mycobacterium tuberculosis / metabolism
  • Mycobacterium tuberculosis / ultrastructure
  • Quinolones / chemistry
  • Quinolones / isolation & purification
  • Quinolones / pharmacology
  • Streptomyces / chemistry*
  • Streptomyces / metabolism

Substances

  • Antitubercular Agents
  • DNA, Bacterial
  • Quinolones
  • nybomycin