Genetic characterization of the tick-borne orbiviruses

Viruses. 2015 Apr 28;7(5):2185-209. doi: 10.3390/v7052185.

Abstract

The International Committee for Taxonomy of Viruses (ICTV) recognizes four species of tick-borne orbiviruses (TBOs): Chenuda virus, Chobar Gorge virus, Wad Medani virus and Great Island virus (genus Orbivirus, family Reoviridae). Nucleotide (nt) and amino acid (aa) sequence comparisons provide a basis for orbivirus detection and classification, however full genome sequence data were only available for the Great Island virus species. We report representative genome-sequences for the three other TBO species (virus isolates: Chenuda virus (CNUV); Chobar Gorge virus (CGV) and Wad Medani virus (WMV)). Phylogenetic comparisons show that TBOs cluster separately from insect-borne orbiviruses (IBOs). CNUV, CGV, WMV and GIV share low level aa/nt identities with other orbiviruses, in 'conserved' Pol, T2 and T13 proteins/genes, identifying them as four distinct virus-species. The TBO genome segment encoding cell attachment, outer capsid protein 1 (OC1), is approximately half the size of the equivalent segment from insect-borne orbiviruses, helping to explain why tick-borne orbiviruses have a ~1 kb smaller genome.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cluster Analysis
  • Genome, Viral*
  • Molecular Sequence Data
  • Orbivirus / classification*
  • Orbivirus / genetics*
  • Orbivirus / isolation & purification
  • Phylogeny
  • RNA, Viral / genetics*
  • Sequence Analysis, DNA*
  • Sequence Homology
  • Ticks / virology*

Substances

  • RNA, Viral

Associated data

  • GENBANK/KP268784
  • GENBANK/KP268785
  • GENBANK/KP268786
  • GENBANK/KP268787
  • GENBANK/KP268788
  • GENBANK/KP268789
  • GENBANK/KP268790
  • GENBANK/KP268791
  • GENBANK/KP268792
  • GENBANK/KP268793
  • GENBANK/KP268794
  • GENBANK/KP268795
  • GENBANK/KP268796
  • GENBANK/KP268797
  • GENBANK/KP268798
  • GENBANK/KP268799
  • GENBANK/KP268800
  • GENBANK/KP268801
  • GENBANK/KP268802
  • GENBANK/KP268803
  • GENBANK/KP268804
  • GENBANK/KP268805
  • GENBANK/KP268806
  • GENBANK/KP268807
  • GENBANK/KP268808
  • GENBANK/KP268809
  • GENBANK/KP268810
  • GENBANK/KP268811
  • GENBANK/KP268812
  • GENBANK/KP268813