Genetic Architecture of Ear Fasciation in Maize (Zea mays) under QTL Scrutiny

PLoS One. 2015 Apr 29;10(4):e0124543. doi: 10.1371/journal.pone.0124543. eCollection 2015.

Abstract

Maize ear fasciation: Knowledge of the genes affecting maize ear inflorescence may lead to better grain yield modeling. Maize ear fasciation, defined as abnormal flattened ears with high kernel row number, is a quantitative trait widely present in Portuguese maize landraces.

Material and methods: Using a segregating population derived from an ear fasciation contrasting cross (consisting of 149 F2:3 families) we established a two location field trial using a complete randomized block design. Correlations and heritabilities for several ear fasciation-related traits and yield were determined. Quantitative Trait Loci (QTL) involved in the inheritance of those traits were identified and candidate genes for these QTL proposed.

Results and discussion: Ear fasciation broad-sense heritability was 0.73. Highly significant correlations were found between ear fasciation and some ear and cob diameters and row number traits. For the 23 yield and ear fasciation-related traits, 65 QTL were identified, out of which 11 were detected in both environments, while for the three principal components, five to six QTL were detected per environment. Detected QTL were distributed across 17 genomic regions and explained individually, 8.7% to 22.4% of the individual traits or principal components phenotypic variance. Several candidate genes for these QTL regions were proposed, such as bearded-ear1, branched silkless1, compact plant1, ramosa2, ramosa3, tasselseed4 and terminal ear1. However, many QTL mapped to regions without known candidate genes, indicating potential chromosomal regions not yet targeted for maize ear traits selection.

Conclusions: Portuguese maize germplasm represents a valuable source of genes or allelic variants for yield improvement and elucidation of the genetic basis of ear fasciation traits. Future studies should focus on fine mapping of the identified genomic regions with the aim of map-based cloning.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Chromosome Mapping
  • Chromosomes, Plant / genetics
  • Phenotype
  • Plant Proteins / genetics*
  • Quantitative Trait Loci / genetics*
  • Seed Bank
  • Zea mays / genetics*
  • Zea mays / growth & development

Substances

  • Plant Proteins

Grants and funding

This study was funded by the VASO project and by Fundação para a Ciência e a Tecnologia, Portugal (www.fct.pt), through the research projects PEst-OE/EQB/LA0004/2011, PTDC/AGR-ALI/099285/2008 and PTDC/AGR-AAM/70845/2006; research contract by the Ciência 2008 Program (MCVP) and by the research grants SFRH/BD/22188/2005 and SFRH/PROTEC/50365/2009 (PMM). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.