Complementing DIGE proteomics and DNA subarray analyses to shed light on Oenococcus oeni adaptation to ethanol in wine-simulated conditions

J Proteomics. 2015 Jun 18:123:114-27. doi: 10.1016/j.jprot.2015.04.019. Epub 2015 Apr 25.

Abstract

Direct addition of Oenococcus oeni starters into wine can cause viability problems. In the present study, the influence of ethanol in wine-simulated conditions on O. oeni has been evaluated by complementing microarray techniques and DIGE proteomics. Two different ethanol concentrations were studied. In 12% ethanol, pyrimidine anabolism was stimulated, but in 8% ethanol some energy-consuming biosynthetic pathways were limited. The most significant result was the stress response induced by alcohol that concerned both the cell-envelope and specific stress proteins. Interestingly, 8% and 12% ethanol triggered different stress responses: in mild ethanol stress (8%), chaperones with prevalent refolding activity (like HSP20) were over-expressed, whereas at higher alcohol concentration (12%), together with HSP20 and the refolding DNAJ/K, also chaperones having proteolytic activity (like ClpP) were induced. Furthermore the stress response repressor HrcA was downregulated only at 12% ethanol, suggesting that it controls stress pathways, which are different from those active at 8% alcohol. This result confirms that the HrcA system is operative in O. oeni where the CtrS system is prevalent.

Biological significance: The use of malolactic starter cultures has become widespread to control the MLF process and to prevent off-flavors. There is significant interest in understanding the molecular mechanisms that O. oeni uses to adapt to harsh wine conditions. The overall results highlight that the alcohol-induced stress response involves not only biosynthesis of stress proteins but also envelope-linked mechanisms. From a practical point of view this research underlines the importance of starters acclimation to induce responses that would allow better adaptation to the wine. As a consequence, a well adapted starter can complete malolactic fermentation and improve the final wine quality.

Keywords: Cell envelope; Chaperones; EPS; Energy metabolism; O. oeni; Stress response.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Cell Membrane / metabolism
  • Cell Wall / metabolism
  • Denaturing Gradient Gel Electrophoresis
  • Ethanol / chemistry*
  • Fermentation
  • HSP20 Heat-Shock Proteins / metabolism
  • Malates / metabolism
  • Mass Spectrometry
  • Molecular Chaperones / metabolism
  • Oenococcus / metabolism*
  • Oligonucleotide Array Sequence Analysis*
  • Protein Array Analysis
  • Protein Denaturation
  • Protein Folding
  • Proteolysis
  • Proteome
  • Proteomics / methods*
  • Transcriptome
  • Wine

Substances

  • HSP20 Heat-Shock Proteins
  • Malates
  • Molecular Chaperones
  • Proteome
  • Ethanol