Identification of peptide-specific TCR genes by in vitro peptide stimulation and CDR3 length polymorphism analysis

Cancer Lett. 2015 Jul 10;363(1):83-91. doi: 10.1016/j.canlet.2015.04.001. Epub 2015 Apr 15.

Abstract

Identification of TCR genes specific for tumor-associated antigens (TAAs) is necessary for TCR gene modification of T cells, which is applied in anti-tumor adoptive T cell therapy (ACT). The usual identification methods are based on isolating single peptide-responding T cells and cloning the TCR gene by in vitro expansion or by single-cell RT-PCR. However, the long and exacting in vitro culture period and demanding operational requirements restrict the application of these methods. Immunoscope is an effective tool that profiles a repertoire of TCRs and identifies significantly expanded clones through CDR3 length analysis. In this study, a survivin-derived mutant peptide optimized for HLA-A2 binding was selected to load DCs and activate T cells. The monoclonal expansion of TCRA and TCRB genes was separately identified by Immunoscope analysis and following sequence identification, the properly paired TCR genes were transferred into T cells. Peptide recognition and cytotoxicity assays indicated that TCR-modified PBMCs could respond to both the mutant and wild type peptides and lyse target cells. These results show that combining Immunoscope with in vitro peptide stimulation provides an alternative and superior method for identifying specific TCR genes, which represents a significant advance for the application of TCR gene-modified T cells.

Keywords: Immunoscope; In vitro stimulation; Monoclonal expansion; Mutated peptide; TCR.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antigens, Neoplasm / genetics
  • Antigens, Neoplasm / immunology*
  • Antigens, Neoplasm / metabolism
  • Base Sequence
  • Clone Cells
  • Coculture Techniques
  • Complementarity Determining Regions / genetics
  • Complementarity Determining Regions / immunology*
  • Complementarity Determining Regions / metabolism
  • Cytotoxicity, Immunologic
  • Dendritic Cells / immunology
  • Dendritic Cells / metabolism
  • Gene Expression Profiling / methods*
  • Genes, T-Cell Receptor / immunology*
  • HEK293 Cells
  • HLA-A2 Antigen / immunology
  • HLA-A2 Antigen / metabolism
  • Hep G2 Cells
  • Humans
  • Inhibitor of Apoptosis Proteins / genetics
  • Inhibitor of Apoptosis Proteins / immunology*
  • Inhibitor of Apoptosis Proteins / metabolism
  • Jurkat Cells
  • Lymphocyte Activation
  • MCF-7 Cells
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Mutation
  • Neoplasms / genetics
  • Neoplasms / immunology
  • Neoplasms / metabolism
  • Neoplasms / pathology
  • Peptides / genetics
  • Peptides / immunology*
  • Peptides / metabolism
  • Polymorphism, Genetic*
  • Protein Binding
  • Sequence Analysis, DNA
  • Survivin
  • T-Lymphocytes / immunology*
  • T-Lymphocytes / metabolism
  • Transfection

Substances

  • Antigens, Neoplasm
  • BIRC5 protein, human
  • Complementarity Determining Regions
  • HLA-A2 Antigen
  • Inhibitor of Apoptosis Proteins
  • Peptides
  • Survivin