A quaternary mechanism enables the complex biological functions of octameric human UDP-glucose pyrophosphorylase, a key enzyme in cell metabolism

Sci Rep. 2015 Apr 10:5:9618. doi: 10.1038/srep09618.

Abstract

In mammals, UDP-glucose pyrophosphorylase (UGP) is the only enzyme capable of activating glucose-1-phosphate (Glc-1-P) to UDP-glucose (UDP-Glc), a metabolite located at the intersection of virtually all metabolic pathways in the mammalian cell. Despite the essential role of its product, the molecular basis of UGP function is poorly understood. Here we report the crystal structure of human UGP in complex with its product UDP-Glc. Beyond providing first insight into the active site architecture, we describe the substrate binding mode and intermolecular interactions in the octameric enzyme that are crucial to its activity. Importantly, the quaternary mechanism identified for human UGP in this study may be common for oligomeric sugar-activating nucleotidyltransferases. Elucidating such mechanisms is essential for understanding nucleotide sugar metabolism and opens the perspective for the development of drugs that specifically inhibit simpler organized nucleotidyltransferases in pathogens.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • Catalytic Domain
  • Glucose / chemistry
  • Glucose / metabolism
  • Humans
  • Metabolic Networks and Pathways
  • Models, Molecular
  • Molecular Conformation
  • Molecular Sequence Data
  • Mutation
  • Protein Binding
  • Protein Multimerization*
  • Protein Stability
  • Protein Subunits
  • Structure-Activity Relationship
  • Substrate Specificity
  • Thermodynamics
  • UTP-Glucose-1-Phosphate Uridylyltransferase / chemistry*
  • UTP-Glucose-1-Phosphate Uridylyltransferase / genetics
  • UTP-Glucose-1-Phosphate Uridylyltransferase / metabolism*
  • Uridine Diphosphate Glucose / chemistry
  • Uridine Diphosphate Glucose / metabolism

Substances

  • Protein Subunits
  • UTP-Glucose-1-Phosphate Uridylyltransferase
  • Glucose
  • Uridine Diphosphate Glucose