Structure-activity relationships for antibacterial to antifungal conversion of kanamycin to amphiphilic analogues

J Org Chem. 2015 May 1;80(9):4398-411. doi: 10.1021/acs.joc.5b00248. Epub 2015 Apr 13.

Abstract

Novel fungicides are urgently needed. It was recently reported that the attachment of an octyl group at the O-4″ position of kanamycin B converts this antibacterial aminoglycoside into a novel antifungal agent. To elucidate the structure-activity relationship (SAR) for this phenomenon, a lead compound FG03 with a hydroxyl group replacing the 3″-NH2 group of kanamycin B was synthesized. FG03's antifungal activity and synthetic scheme inspired the synthesis of a library of kanamycin B analogues alkylated at various hydroxyl groups. SAR studies of the library revealed that for antifungal activity the O-4″ position is the optimal site for attaching a linear alkyl chain and that the 3″-NH2 and 6″-OH groups of the kanamycin B parent molecule are not essential for antifungal activity. The discovery of lead compound, FG03, is an example of reviving clinically obsolete drugs like kanamycin by simple chemical modification and an alternative strategy for discovering novel antimicrobials.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Anti-Bacterial Agents / chemical synthesis*
  • Anti-Bacterial Agents / chemistry
  • Antifungal Agents / chemical synthesis*
  • Antifungal Agents / chemistry
  • Carbohydrate Conformation
  • Carbohydrate Sequence
  • Drug Discovery
  • Kanamycin / chemistry*
  • Molecular Sequence Data
  • Structure-Activity Relationship
  • Surface-Active Agents / chemical synthesis*
  • Surface-Active Agents / chemistry

Substances

  • Anti-Bacterial Agents
  • Antifungal Agents
  • Surface-Active Agents
  • Kanamycin