We prove existence and uniqueness of solutions, continuous dependence from the initial datum and stability with respect to the boundary condition in a class of initial--boundary value problems for systems of balance laws. The particular choice of the boundary condition allows to comprehend models with very different structures. In particular, we consider a juvenile-adult model, the problem of the optimal mating ratio and a model for the optimal management of biological resources. The stability result obtained allows to tackle various optimal management/control problems, providing sufficient conditions for the existence of optimal choices/controls.