The superconducting state is formed by the condensation of a large number of Cooper pairs. The normal state electronic properties can give significant influence on the superconducting state. For usual type-II superconductors, the vortices are cylinder like with a round cross-section. For many two dimensional superconductors, such as Cuprates, albeit the in-plane anisotropy, the vortices generally have a round shape. In this paper we report results based on the scanning tunnelling microscopy/spectroscopy measurements on a newly discovered superconductor Ta4Pd3Te16. The chain-like conducting channels of PdTe2 in Ta4Pd3Te16 make a significant anisotropy of the in-plane Fermi velocity. We suggest at least one anisotropic superconducting gap with gap minima or possible node exists in this multiband system. In addition, elongated vortices are observed with an anisotropy of ξ||b/ξ&bottom⊥b ≈ 2.5. Clear Caroli-de Gennes-Matricon states are also observed within the vortex cores. Our results will initiate the study on the elongated vortices and superconducting mechanism in the new superconductor Ta4Pd3Te16.