Molecular dynamics simulations on the interaction of the transmembrane NavAb channel with cholesterol and lipids in the membrane

J Biomol Struct Dyn. 2016;34(2):318-26. doi: 10.1080/07391102.2015.1030691. Epub 2015 Apr 18.

Abstract

Increased cholesterol levels are associated with multiple pathological conditions. In this work, molecular dynamics simulations were applied to observe the influence of membrane cholesterol levels on a voltage-gated sodium channel. Different lipid compositions are modeled around the channel to obtain information about the possible effects by which cholesterol influences NavAb channels. Cholesterol was normally not directly interacting with either the closed or inactivated conformation. Cholesterol increased lipid packing implying that it plays a crucial role in restricting lipid movement in the region around 1 nm of the channel in a 1-palmitoyl-2-oeleoyl phosphatidylcholine matrix. Our results provide the first computational indication of an indirect modulation of NavAb channels by membrane cholesterol.

Keywords: NavAb; cholesterol; membrane composition; sodium channel.

MeSH terms

  • Bacterial Proteins / chemistry
  • Bacterial Proteins / metabolism*
  • Cell Membrane / metabolism*
  • Cholesterol / chemistry
  • Cholesterol / metabolism*
  • Lipid Bilayers / metabolism
  • Membrane Fluidity
  • Molecular Dynamics Simulation*
  • Phosphatidylcholines / chemistry
  • Phosphatidylcholines / metabolism*
  • Sodium Channels / chemistry
  • Sodium Channels / metabolism*

Substances

  • Bacterial Proteins
  • Lipid Bilayers
  • Phosphatidylcholines
  • Sodium Channels
  • Cholesterol
  • 1-palmitoyl-2-oleoylphosphatidylcholine