The crystal structure of Z-Gly-Aib-Gly-Aib-OtBu

J Pept Sci. 2015 Jun;21(6):476-9. doi: 10.1002/psc.2764. Epub 2015 Mar 17.

Abstract

The synthetic peptide Z-Gly-Aib-Gly-Aib-OtBu was dissolved in methanol and crystallized in a mixture of ethyl acetate and petroleum ether. The crystals belong to the centrosymmetric space group P4/n that is observed less than 0.3% in the Cambridge Structural Database. The first Gly residue assumes a semi-extended conformation (φ ±62°, ψ ∓131°). The right-handed peptide folds in two consecutive β-turns of type II' and type I or an incipient 310 -helix, and the left-handed counterpart folds accordingly in the opposite configuration. In the crystal lattice, one molecule is linked to four neighbors in the ab-plane via hydrogen bonds. These bonds form a continuous network of left- and right-handed molecules. The successive ab-planes stack via apolar contacts in the c-direction. An ethyl acetate molecule is situated on and close to the fourfold axis.

Keywords: Gly-Aib peptides; achiral peptides; centrosymmetry; crystal structure; semi-extended conformation; α-aminoisobutyric acid.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acetates / chemistry
  • Alkanes / chemistry
  • Charcoal / chemistry
  • Hydrogen Bonding
  • Methanol / chemistry
  • Models, Molecular*
  • Peptides / chemistry*
  • Protein Conformation

Substances

  • Acetates
  • Alkanes
  • Peptides
  • Charcoal
  • ethyl acetate
  • naphtha
  • Methanol