Sugarcane giant borer transcriptome analysis and identification of genes related to digestion

PLoS One. 2015 Feb 23;10(2):e0118231. doi: 10.1371/journal.pone.0118231. eCollection 2015.

Abstract

Sugarcane is a widely cultivated plant that serves primarily as a source of sugar and ethanol. Its annual yield can be significantly reduced by the action of several insect pests including the sugarcane giant borer (Telchin licus licus), a lepidopteran that presents a long life cycle and which efforts to control it using pesticides have been inefficient. Although its economical relevance, only a few DNA sequences are available for this species in the GenBank. Pyrosequencing technology was used to investigate the transcriptome of several developmental stages of the insect. To maximize transcript diversity, a pool of total RNA was extracted from whole body insects and used to construct a normalized cDNA database. Sequencing produced over 650,000 reads, which were de novo assembled to generate a reference library of 23,824 contigs. After quality score and annotation, 43% of the contigs had at least one BLAST hit against the NCBI non-redundant database, and 40% showed similarities with the lepidopteran Bombyx mori. In a further analysis, we conducted a comparison with Manduca sexta midgut sequences to identify transcripts of genes involved in digestion. Of these transcripts, many presented an expansion or depletion in gene number, compared to B. mori genome. From the sugarcane giant borer (SGB) transcriptome, a number of aminopeptidase N (APN) cDNAs were characterized based on homology to those reported as Cry toxin receptors. This is the first report that provides a large-scale EST database for the species. Transcriptome analysis will certainly be useful to identify novel developmental genes, to better understand the insect's biology and to guide the development of new strategies for insect-pest control.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Animals
  • CD13 Antigens / genetics
  • Digestion / genetics*
  • Expressed Sequence Tags / chemistry
  • Gene Expression Profiling / methods*
  • Gene Library
  • Gene Ontology
  • Insect Proteins / genetics*
  • Lepidoptera / genetics*
  • Lepidoptera / growth & development
  • Lepidoptera / physiology
  • Life Cycle Stages / genetics
  • Molecular Sequence Data
  • Reverse Transcriptase Polymerase Chain Reaction
  • Saccharum / parasitology*
  • Sequence Analysis, DNA
  • Sequence Homology, Amino Acid

Substances

  • Insect Proteins
  • CD13 Antigens

Associated data

  • GENBANK/JZ578314
  • GENBANK/JZ578315
  • GENBANK/JZ578316
  • GENBANK/JZ578317
  • GENBANK/JZ578318
  • SRA/SRR1204999

Grants and funding

This work was supported by Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (http://www.capes.gov.br/), Empresa Brasileira de Pesquisa Agropecuária (http://www.embrapa.br/), Conselho Nacional de Desenvolvimento Científico e Tecnológico (http://www.cnpq.br/), and Fundação de Apoio à Pesquisa do Distrito Federal (http://www.fap.df.gov.br/). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.