Near Full-Length Characterization and Population Dynamics of the Human Immunodeficiency Virus Type I Circulating Recombinant Form 42 (CRF42_BF) in Luxembourg

AIDS Res Hum Retroviruses. 2015 May;31(5):554-8. doi: 10.1089/AID.2014.0364. Epub 2015 Mar 6.

Abstract

A new recombinant form representing a mosaic of HIV-1 subtype B and F1 and designated as CRF42_BF was identified in Luxembourg. We confirmed the inedited nature of CRF42_BF by near full-length genome characterization and retrieved a possible ancestor originating from Brazil. The demographic history of CRF42_BF in Luxembourg using Bayesian coalescent-based methods was investigated. The exponential phase of the logistic growth happened in a very short time period of approximately 5 months associated with a high mean rate of population growth of 15.02 new infections per year. However, CRF42_BF was not characterized by either a higher ex vivo replication capacity in peripheral blood mononuclear cells (PBMCs) or a higher ex vivo transmission efficiency from monocyte-derived dendritic cells to PBMCs as compared to B and F1 viruses. These data do not support a high pathogenic potential of CFR42_BF but rather an initial bursting spread of the recombinant probably due to a more favorable transmission route.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Genotype*
  • HIV Infections / epidemiology
  • HIV Infections / virology*
  • HIV-1 / classification*
  • HIV-1 / genetics
  • HIV-1 / isolation & purification*
  • HIV-1 / physiology
  • Humans
  • Leukocytes, Mononuclear / virology
  • Luxembourg / epidemiology
  • Molecular Epidemiology
  • Molecular Sequence Data
  • Phylogeny
  • RNA, Viral / genetics*
  • Recombination, Genetic
  • Sequence Analysis, DNA
  • Sequence Homology
  • Virus Replication

Substances

  • RNA, Viral

Associated data

  • GENBANK/AY569830
  • GENBANK/HQ718234
  • GENBANK/HQ718277
  • GENBANK/JN642564
  • GENBANK/JQ292572
  • GENBANK/JQ292573
  • GENBANK/JQ292574
  • GENBANK/JQ292575
  • GENBANK/JQ292576
  • GENBANK/JQ292577