Comparative transcriptome analysis of developmental stages of the Limonium bicolor leaf generates insights into salt gland differentiation

Plant Cell Environ. 2015 Aug;38(8):1637-57. doi: 10.1111/pce.12514. Epub 2015 Apr 17.

Abstract

With the expansion of saline land worldwide, it is essential to establish a model halophyte to study the salt-tolerance mechanism. The salt glands in the epidermis of Limonium bicolor (a recretohalophyte) play a pivotal role in salt tolerance by secreting excess salts from tissues. Despite the importance of salt secretion, nothing is known about the molecular mechanisms of salt gland development. In this study, we applied RNA sequencing to profile early leaf development using five distinct developmental stages, which were quantified by successive collections of the first true leaves of L. bicolor with precise spatial and temporal resolution. Specific gene expression patterns were identified for each developmental stage. In particular, we found that genes controlling salt gland differentiation in L. bicolor may evolve in a trichome formation, which was also confirmed by mutants with increased salt gland densities. Genes involved in the special ultrastructure of salt glands were also elucidated. Twenty-six genes were proposed to participate in salt gland differentiation. Our dataset sheds light on the molecular processes underpinning salt gland development and thus represents a first step towards the bioengineering of active salt-secretion capacity in crops.

Keywords: Illumina sequencing; leaf development; recretohalophyte; salt gland; transcriptome.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Calibration
  • Cluster Analysis
  • Down-Regulation / genetics
  • Gene Expression Profiling*
  • Gene Expression Regulation, Developmental*
  • Gene Expression Regulation, Plant*
  • Gene Ontology
  • Genes, Plant
  • Mitochondria / metabolism
  • Models, Biological
  • Molecular Sequence Annotation
  • Mutation / genetics
  • Plant Leaves / anatomy & histology*
  • Plant Leaves / genetics*
  • Plant Leaves / growth & development
  • Plant Leaves / ultrastructure
  • Plant Stomata / genetics
  • Plumbaginaceae / genetics*
  • Plumbaginaceae / growth & development*
  • Plumbaginaceae / ultrastructure
  • RNA, Messenger / genetics
  • RNA, Messenger / metabolism
  • Real-Time Polymerase Chain Reaction
  • Reproducibility of Results
  • Sequence Analysis, RNA
  • Transcription Factors / metabolism
  • Transcriptome / genetics
  • Trichomes / metabolism
  • Up-Regulation / genetics

Substances

  • RNA, Messenger
  • Transcription Factors

Associated data

  • GENBANK/GSE52549