The complete chloroplast genome sequence of Dendrobium nobile

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 Nov;27(6):4090-4092. doi: 10.3109/19401736.2014.1003858. Epub 2015 Jan 29.

Abstract

The complete chloroplast (cp) genome sequence of Dendrobium nobile, an endangered and traditional Chinese medicine with important economic value, is presented in this article. The total genome size is 150,793 bp, containing a large single copy (LSC) region (84,939 bp) and a small single copy region (SSC) (13,310 bp) which were separated by two inverted repeat (IRs) regions (26,272 bp). The overall GC contents of the plastid genome were 38.8%. In total, 130 unique genes were annotated and they were consisted of 76 protein-coding genes, 30 tRNA genes and 4 rRNA genes. Fourteen genes contained one or two introns.

Keywords: Complete chloroplast genome; Dendrobium nobile; orchidaceae.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Composition / genetics
  • Chloroplasts / genetics*
  • DNA, Chloroplast / genetics
  • Dendrobium / genetics*
  • Genes, Plant / genetics
  • Genes, rRNA / genetics
  • Genome Size / genetics
  • Genome, Chloroplast / genetics*
  • Genome, Plant / genetics
  • Introns / genetics
  • Phylogeny
  • RNA, Transfer / genetics
  • Repetitive Sequences, Nucleic Acid / genetics
  • Sequence Analysis, DNA / methods
  • Whole Genome Sequencing / methods

Substances

  • DNA, Chloroplast
  • RNA, Transfer