How the flexibility of human histone deacetylases influences ligand binding: an overview

Drug Discov Today. 2015 Jun;20(6):736-42. doi: 10.1016/j.drudis.2015.01.004. Epub 2015 Jan 15.

Abstract

Over the past decade, human histone deacetylases (HDACs) have become interesting as therapeutic targets because of the benefits that their modulation might provide in aging-related disorders. Recently, studies using crystallography and computational chemistry have provided information on the structure and conformational changes related to HDAC-mediated recognition events. Through the description of the key mass and one-off movements observed in metal-dependent HDACs, here we highlight the impact of flexibility on drug-binding affinity and specificity. The collected information will be useful for not only a better understanding of the biological functions of HDACs, but also the conception of new selective binders.

Publication types

  • Review

MeSH terms

  • Animals
  • Binding Sites
  • Catalytic Domain
  • Drug Design*
  • Histone Deacetylase Inhibitors / chemistry
  • Histone Deacetylase Inhibitors / metabolism
  • Histone Deacetylase Inhibitors / pharmacology*
  • Histone Deacetylases / chemistry
  • Histone Deacetylases / metabolism*
  • Humans
  • Isoenzymes
  • Ligands
  • Models, Molecular
  • Protein Binding
  • Protein Conformation
  • Structure-Activity Relationship
  • Substrate Specificity

Substances

  • Histone Deacetylase Inhibitors
  • Isoenzymes
  • Ligands
  • Histone Deacetylases