Structure of the human lck gene: differences in genomic organisation within src-related genes affect only N-terminal exons

Gene. 1989 Dec 7;84(1):105-13. doi: 10.1016/0378-1119(89)90144-3.

Abstract

Although cDNA sequences coding for several Rous sarcoma virus Src-related protein tyrosine kinases (PTKs) have been reported for several years, knowledge of the structure and organisation of genes of the src family is still limited. In this work, a detailed structure and organisation of the human lck gene is reported. A 17-kb genomic clone encoding human p56 Lck, a lymphocyte-specific PTK of the Src-related subfamily, has been isolated. The human lck gene is organized in 13 exons, one more than in the human cellular (c)-src gene. The twelve coding exons are located in this clone, whereas the putative 5'-noncoding exon is probably located very far upstream from the second exon. Splicing sites for exons 4 to 12, which encode both conserved phospholipase-C-like and catalytic domains of the Src-like PTKs, arise exactly at the same position for the human lck, human c-src and c-fgr genes. The only differences concern the splice sites of exons 1' and 2, which encode the unique N-terminal domain of human Lck. These results give further evidence that the different PTKs of the Src-like family have probably evolved through the mechanism of exon shuffling.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Avian Sarcoma Viruses / enzymology
  • Avian Sarcoma Viruses / genetics*
  • Base Sequence
  • Cloning, Molecular
  • Exons
  • Genes*
  • Genome, Human
  • Humans
  • Introns
  • Molecular Sequence Data
  • Multigene Family
  • Oncogene Proteins, Viral / genetics*
  • Protein-Tyrosine Kinases / genetics*
  • RNA Splicing
  • Restriction Mapping
  • Sequence Homology, Nucleic Acid
  • T-Lymphocytes / enzymology

Substances

  • Oncogene Proteins, Viral
  • Protein-Tyrosine Kinases

Associated data

  • GENBANK/X14053
  • GENBANK/X14054
  • GENBANK/X14055