Combining cross-metathesis and activity-based protein profiling: new β-lactone motifs for targeting serine hydrolases

Bioorg Med Chem Lett. 2015 Jan 15;25(2):317-21. doi: 10.1016/j.bmcl.2014.11.038.

Abstract

β-Lactones are a privileged structural motif as enzyme inhibitors and chemical probes, particularly for the inhibition of enzymes from the serine hydrolase class. Herein, we demonstrate that cross-metathesis (CM) of α-methylene-β-lactones offers rapid access to structurally diverse, previously unexplored β-lactones. Combining this approach with competitive activity-based protein profiling (ABPP) identified lead β-lactone inhibitors/probes for several serine hydrolases, including disease-associated enzymes and enzymes of uncharacterized function. The structural diversity afforded by the α-methylene-β-lactone scaffold thus expands the landscape of serine hydrolases that can be targeted by small-molecule inhibitors and should further the functional characterization of enzymes from this class through the optimization of target-selective probes.

Keywords: ABPP; Cross metathesis; Serine hydrolases; α-Methylene-β-lactones; β-Lactones.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Binding, Competitive
  • Brain / drug effects*
  • Brain / enzymology
  • Chromatography, Liquid
  • Colonic Neoplasms / drug therapy*
  • Colonic Neoplasms / enzymology
  • Humans
  • Lactones / chemistry*
  • Lactones / pharmacology*
  • Mice
  • Molecular Structure
  • Proteome / analysis*
  • Serine Endopeptidases / chemistry*
  • Serine Endopeptidases / metabolism
  • Serine Proteinase Inhibitors / chemistry
  • Serine Proteinase Inhibitors / pharmacology*
  • Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
  • Stereoisomerism
  • Structure-Activity Relationship
  • Tumor Cells, Cultured

Substances

  • Lactones
  • Proteome
  • Serine Proteinase Inhibitors
  • methylene-lactone
  • Serine Endopeptidases