CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts

Edrisse Chermak; Andrea Petta; Luigi Serra; Anna Vangone; Vittorio Scarano; Luigi Cavallo; Romina Oliva

doi:10.1093/bioinformatics/btu837

CONSRANK: a server for the analysis, comparison and ranking of docking models based on inter-residue contacts

Bioinformatics. 2015 May 1;31(9):1481-3. doi: 10.1093/bioinformatics/btu837. Epub 2014 Dec 21.

Authors

Edrisse Chermak¹, Andrea Petta¹, Luigi Serra¹, Anna Vangone¹, Vittorio Scarano¹, Luigi Cavallo¹, Romina Oliva¹

Affiliation

¹ Kaust Catalysis Center, King Abdullah University of Science and Technology, Thuwal, Saudi Arabia, Dipartimento di Informatica ed Applicazioni, Department of Chemistry and Biology, University of Salerno, Fisciano, SA, Italy and Department of Sciences and Technologies, University "Parthenope" of Naples, Naples, Italy.

PMID: 25535242
DOI: 10.1093/bioinformatics/btu837

Abstract

Summary: Herein, we present CONSRANK, a web tool for analyzing, comparing and ranking protein-protein and protein-nucleic acid docking models, based on the conservation of inter-residue contacts and its visualization in 2D and 3D interactive contact maps.

Availability and implementation: CONSRANK is accessible as a public web tool at https://www.molnac.unisa.it/BioTools/consrank/.

Contact: romina.oliva@uniparthenope.it.

Publication types

Research Support, Non-U.S. Gov't

MeSH terms

DNA / chemistry
DNA / metabolism
DNA-Binding Proteins / chemistry
DNA-Binding Proteins / metabolism
Internet
Molecular Docking Simulation / methods*
Protein Interaction Mapping / methods*
RNA / chemistry
RNA / metabolism
RNA-Binding Proteins / chemistry
RNA-Binding Proteins / metabolism
Software*

Substances

DNA-Binding Proteins
RNA-Binding Proteins
RNA
DNA