Ultrafast cooling reveals microsecond-scale biomolecular dynamics

Nat Commun. 2014 Dec 17:5:5737. doi: 10.1038/ncomms6737.

Abstract

The temperature-jump technique, in which the sample is rapidly heated by a powerful laser pulse, has been widely used to probe the fast dynamics of folding of proteins and nucleic acids. However, the existing temperature-jump setups tend to involve sophisticated and expensive instrumentation, while providing only modest temperature changes of ~10-15 °C, and the temperature changes are only rapid for heating, but not cooling. Here we present a setup comprising a thermally conductive sapphire substrate with light-absorptive nano-coating, a microfluidic device and a rapidly switched moderate-power infrared laser with the laser beam focused on the nano-coating, enabling heating and cooling of aqueous solutions by ~50 °C on a 1-μs time scale. The setup is used to probe folding and unfolding dynamics of DNA hairpins after direct and inverse temperature jumps, revealing low-pass filter behaviour during periodic temperature variations.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Cold Temperature
  • DNA / chemistry*
  • Hot Temperature
  • Inverted Repeat Sequences*
  • Kinetics
  • Lasers
  • Light
  • Microfluidic Analytical Techniques / instrumentation*
  • Molecular Dynamics Simulation*
  • Nucleic Acid Conformation
  • Time Factors

Substances

  • DNA