UV photodissociation of proline-containing peptide ions: insights from molecular dynamics

J Am Soc Mass Spectrom. 2015 Mar;26(3):432-43. doi: 10.1007/s13361-014-1038-1. Epub 2014 Dec 11.

Abstract

UV photodissociation of proline-containing peptide ions leads to unusual product ions. In this paper, we report laser-induced dissociation of a series of proline-containing peptides at 213 nm. We observe specific fragmentation pathways corresponding to the formation of (y-2), (a + 2) and (b + 2) fragment ions. This was not observed at 266 nm or for peptides which do not contain proline residues. In order to obtain insights into the fragmentation dynamics at 213 nm, a small peptide (RPK for arginine-proline-lysine) was studied both theoretically and experimentally. Calculations of absorption spectra and non-adiabatic molecular dynamics (MD) were made. Second and third excited singlet states, S(2) and S(3), lie close to 213 nm. Non-adiabatic MD simulation starting from S(2) and S(3) shows that these transitions are followed by C-C and C-N bond activation close to the proline residue. After this first relaxation step, consecutive rearrangements and proton transfers are required to produce unusual (y-2), (a + 2) and (b + 2) fragment ions. These fragmentation mechanisms were confirmed by H/D exchange experiments.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Deuterium Exchange Measurement
  • Molecular Dynamics Simulation
  • Peptides / chemistry*
  • Peptides / radiation effects*
  • Photolysis*
  • Proline / chemistry*
  • Ultraviolet Rays*

Substances

  • Peptides
  • Proline