Pentacyclic antibiotics from a tidal mud flat-derived actinomycete

J Nat Prod. 2015 Mar 27;78(3):524-9. doi: 10.1021/np500736b. Epub 2014 Dec 11.

Abstract

The combination of investigating a unique source of chemically prolific bacterium with an LC/MS-based bacterial strain selection approach resulted in the discovery of two new secondary metabolites, buanmycin (1) and buanquinone (2), from the culture of a marine Streptomyces strain, which was isolated from a tidal mudflat in Buan, Republic of Korea. The carbon backbone of buanmycin (1), comprising 20 quaternary carbons out of 30 total carbons, was determined via (13)C-(13)C COSY NMR analysis after labeling 1 with (13)C by culturing the bacterium with (13)C-glucose. The complete structure of 1 was confidently elucidated, primarily based on 1D and 2D NMR spectroscopic and X-ray crystallographic analysis, as that of a new pentacyclic xanthone. The absolute configuration of the α-methyl serine unit in 1 was established by applying the advanced Marfey's method. The structure of buanquinone (2) was determined to be a new pentacyclic quinone based on NMR and MS spectroscopic data. Buanmycin exhibited potent cytotoxicity against colorectal carcinoma cells (HCT-116) and gastric carcinoma cells (SNU-638) with submicromolar IC50 values and strongly inhibited the pathogenic Gram-negative bacterium Salmonella enterica (MIC = 0.7 μM). In particular, buanmycin demonstrated inhibition of sortase A, which is a promising target for antibiotic discovery.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Actinobacteria / chemistry*
  • Aminoacyltransferases / drug effects
  • Anti-Bacterial Agents / chemistry
  • Anti-Bacterial Agents / isolation & purification*
  • Anti-Bacterial Agents / pharmacology*
  • Antineoplastic Agents / chemistry
  • Antineoplastic Agents / isolation & purification*
  • Antineoplastic Agents / pharmacology*
  • Bacterial Proteins / drug effects
  • Candida albicans / drug effects
  • Crystallography, X-Ray
  • Cysteine Endopeptidases / drug effects
  • Drug Screening Assays, Antitumor
  • Gram-Negative Bacteria / drug effects
  • Heterocyclic Compounds, 4 or More Rings / chemistry
  • Heterocyclic Compounds, 4 or More Rings / isolation & purification*
  • Heterocyclic Compounds, 4 or More Rings / pharmacology*
  • Microbial Sensitivity Tests
  • Molecular Structure
  • Nuclear Magnetic Resonance, Biomolecular
  • Quinones / chemistry
  • Quinones / isolation & purification*
  • Quinones / pharmacology*
  • Republic of Korea
  • Staphylococcus aureus / drug effects
  • Streptomyces / chemistry*

Substances

  • Anti-Bacterial Agents
  • Antineoplastic Agents
  • Bacterial Proteins
  • Heterocyclic Compounds, 4 or More Rings
  • Quinones
  • buanmycin
  • buanquinone
  • Aminoacyltransferases
  • sortase A
  • Cysteine Endopeptidases