Establishment of a minigenome system for Oropouche virus reveals the S genome segment to be significantly longer than reported previously

J Gen Virol. 2015 Mar;96(Pt 3):513-523. doi: 10.1099/jgv.0.000005. Epub 2014 Dec 9.

Abstract

Oropouche virus (OROV) is a medically important orthobunyavirus, which causes frequent outbreaks of a febrile illness in the northern parts of Brazil. However, despite being the cause of an estimated half a million human infections since its first isolation in Trinidad in 1955, details of the molecular biology of this tripartite, negative-sense RNA virus remain limited. We have determined the complete nucleotide sequence of the Brazilian prototype strain of OROV, BeAn 19991, and found a number of differences compared with sequences in the database. Most notable were that the S segment contained an additional 204 nt at the 3' end and that there was a critical nucleotide mismatch at position 9 within the base-paired terminal panhandle structure of each genome segment. In addition, we obtained the complete sequence of the Trinidadian prototype strain TRVL-9760 that showed similar characteristics to the BeAn 19991 strain. By using a T7 RNA polymerase-driven minigenome system, we demonstrated that cDNA clones of the BeAn 19991 L and S segments expressed functional proteins, and also that the newly determined terminal untranslated sequences acted as functional promoters in the minigenome assay. By co-transfecting a cDNA to the viral glycoproteins, virus-like particles were generated that packaged a minigenome and were capable of infecting naive cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Sequence
  • Cloning, Molecular
  • Gene Expression Regulation, Viral / physiology
  • Genome, Viral / genetics*
  • Genomics / methods*
  • Humans
  • Molecular Sequence Data
  • Orthobunyavirus / genetics*
  • RNA, Viral / genetics
  • Sequence Analysis, RNA

Substances

  • RNA, Viral

Associated data

  • GENBANK/KP026179
  • GENBANK/KP026180
  • GENBANK/KP026181
  • GENBANK/KP052850
  • GENBANK/KP052851
  • GENBANK/KP052852