Event detection by feature unpredictability in phase-contrast videos of cell cultures

Med Image Comput Comput Assist Interv. 2014;17(Pt 2):154-61. doi: 10.1007/978-3-319-10470-6_20.

Abstract

In this work we propose a novel framework for generic event monitoring in live cell culture videos, built on the assumption that unpredictable observations should correspond to biological events. We use a small set of event-free data to train a multioutput multikernel Gaussian process model that operates as an event predictor by performing autoregression on a bank of heterogeneous features extracted from consecutive frames of a video sequence. We show that the prediction error of this model can be used as a probability measure of the presence of relevant events, that can enable users to perform further analysis or monitoring of large-scale non-annotated data. We validate our approach in two phase-contrast sequence data sets containing mitosis and apoptosis events: a new private dataset of human bone cancer (osteosarcoma) cells and a benchmark dataset of stem cells.

MeSH terms

  • Algorithms
  • Cell Cycle*
  • Cell Tracking / methods*
  • Cells, Cultured
  • Computer Simulation
  • Data Interpretation, Statistical
  • Humans
  • Image Enhancement / methods
  • Image Interpretation, Computer-Assisted / methods
  • Microscopy, Phase-Contrast / methods*
  • Models, Statistical
  • Osteosarcoma / pathology*
  • Pattern Recognition, Automated / methods*
  • Reproducibility of Results
  • Sensitivity and Specificity
  • Stem Cells / cytology*
  • Subtraction Technique*