Membrane association of the PTEN tumor suppressor: neutron scattering and MD simulations reveal the structure of protein-membrane complexes

Methods. 2015 May:77-78:136-46. doi: 10.1016/j.ymeth.2014.10.014. Epub 2014 Oct 27.

Abstract

Neutron reflection (NR) from planar interfaces is an emerging technology that provides unique and otherwise inaccessible structural information on disordered molecular systems such as membrane proteins associated with fluid bilayers, thus addressing one of the remaining challenges of structural biology. Although intrinsically a low-resolution technique, using structural information from crystallography or NMR allows the construction of NR models that describe the architecture of protein-membrane complexes at high resolution. In addition, a combination of these methods with molecular dynamics (MD) simulations has the potential to reveal the dynamics of protein interactions with the bilayer in atomistic detail. We review recent advances in this area by discussing the application of these techniques to the complex formed by the PTEN phosphatase with the plasma membrane. These studies provide insights in the cellular regulation of PTEN, its interaction with PI(4,5)P2 in the inner plasma membrane and the pathway by which its substrate, PI(3,4,5)P3, accesses the PTEN catalytic site.

Keywords: Molecular dynamics simulations; Neutron reflection; PTEN; Phosphatidylinositolphosphate; Phosphatidylserine; Protein–membrane complex; Tethered bilayer lipid membranes.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Review

MeSH terms

  • Animals
  • Cell Membrane / chemistry*
  • Cell Membrane / metabolism
  • Humans
  • Molecular Dynamics Simulation*
  • Neutron Diffraction / methods*
  • PTEN Phosphohydrolase / chemistry*
  • PTEN Phosphohydrolase / metabolism
  • Protein Structure, Secondary
  • Protein Structure, Tertiary
  • Tumor Suppressor Proteins / chemistry*
  • Tumor Suppressor Proteins / metabolism

Substances

  • Tumor Suppressor Proteins
  • PTEN Phosphohydrolase
  • PTEN protein, human