Complete mitochodrial genome of Vanmanenia pingchowensis (Cypriniformes, Cyprinidae)

Mitochondrial DNA A DNA Mapp Seq Anal. 2016 May;27(3):2184-5. doi: 10.3109/19401736.2014.982617. Epub 2014 Nov 27.

Abstract

The complete mitochondrial genome of Vanmanenia pingchowensis was determined in this study. The gene composition, arrangement and transcriptional orientation in V. pingchowensis mitogenome were identical to most vertebrates. The complete mitogenome of V. pingchowensis was 15,560 bp in size with 13 protein coding genes, 22 tRNA genes, and a control region. Two start codon patterns and three stop codon patterns were found in protein-coding genes. Only the tRNA-Ser2 could not fold into a typical clover-leaf secondary structure for lacking the dihydrouridine arm. Sequences alignment results suggest that the complete mitogenome of V. pingchowensis is an efficient tool to study molecular phylogenetics, biogeography and adaptive evolution of this lineage.

Keywords: Mitogenome; species identification; vanmanenia pingchowensis.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Base Composition / genetics
  • Base Sequence / genetics
  • Cyprinidae / genetics*
  • Cypriniformes / genetics
  • DNA, Mitochondrial / genetics
  • Gene Order / genetics
  • Genes, Mitochondrial / genetics
  • Genome / genetics
  • Genome, Mitochondrial / genetics*
  • Phylogeny
  • Sequence Analysis, DNA / methods
  • Whole Genome Sequencing / methods

Substances

  • DNA, Mitochondrial