Experimental evidence for a hydride transfer mechanism in plant glycolate oxidase catalysis

J Biol Chem. 2015 Jan 16;290(3):1689-98. doi: 10.1074/jbc.M114.618629. Epub 2014 Nov 21.

Abstract

In plants, glycolate oxidase is involved in the photorespiratory cycle, one of the major fluxes at the global scale. To clarify both the nature of the mechanism and possible differences in glycolate oxidase enzyme chemistry from C3 and C4 plant species, we analyzed kinetic parameters of purified recombinant C3 (Arabidopsis thaliana) and C4 (Zea mays) plant enzymes and compared isotope effects using natural and deuterated glycolate in either natural or deuterated solvent. The (12)C/(13)C isotope effect was also investigated for each plant glycolate oxidase protein by measuring the (13)C natural abundance in glycolate using natural or deuterated glycolate as a substrate. Our results suggest that several elemental steps were associated with an hydrogen/deuterium isotope effect and that glycolate α-deprotonation itself was only partially rate-limiting. Calculations of commitment factors from observed kinetic isotope effect values support a hydride transfer mechanism. No significant differences were seen between C3 and C4 enzymes.

Keywords: Catalysis; Enzyme; Glycolate Oxidase; Hydride Transfer; Isotope Effect; Oxidase; Photorespiration; Plant.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alcohol Oxidoreductases / metabolism*
  • Arabidopsis / enzymology*
  • Carbon Isotopes / chemistry
  • Catalysis
  • Deuterium / chemistry
  • Escherichia coli / metabolism
  • Light
  • Models, Chemical
  • Plant Extracts / chemistry
  • Plant Leaves / metabolism
  • Plant Physiological Phenomena
  • Plant Proteins / metabolism*
  • Protein Binding
  • Protein Conformation
  • Solvents / chemistry
  • Zea mays / enzymology*

Substances

  • Carbon Isotopes
  • Plant Extracts
  • Plant Proteins
  • Solvents
  • Deuterium
  • Alcohol Oxidoreductases
  • glycollate oxidase