Genome sequencing and annotation of Afipia septicemium strain OHSU_II

Philip Yang; Guo-Chiuan Hung; Haiyan Lei; Tianwei Li; Bingjie Li; Shien Tsai; Shyh-Ching Lo

doi:10.1016/j.gdata.2014.06.001

Genome sequencing and annotation of Afipia septicemium strain OHSU_II

Genom Data. 2014 Dec:2:123-126. doi: 10.1016/j.gdata.2014.06.001.

Authors

Philip Yang¹, Guo-Chiuan Hung¹, Haiyan Lei¹, Tianwei Li¹, Bingjie Li¹, Shien Tsai¹, Shyh-Ching Lo¹

Affiliation

¹ Tissue Microbiology Laboratory, Division of Cellular and Gene Therapies, Office of Cellular, Tissue and Gene Therapies, Center for Biologics Evaluation and Research, Food and Drug Administration, Bethesda, MD, USA.

Abstract

We report the 5.1 Mb noncontiguous draft genome of Afipia septicemium strain OHSU_II, isolated from blood of a female patient. The genome consists of 5,087,893 bp circular chromosome with no identifiable autonomous plasmid with a G + C content of 61.09% and contains 4898 protein-coding genes and 49 RNA genes including 3 rRNA genes and 46 tRNA genes.

Keywords: Afipia septicemium; CLC bio Genomics Workbench version 6.0; Illumina-MiSeq; Rapid Annotations using Subsystems; Technology (RAST); Whole genome.

Grants and funding

Z99 OD999999/Intramural NIH HHS/United States