The extracellular heme-binding protein HbpS from the soil bacterium Streptomyces reticuli is an aquo-cobalamin binder

J Biol Chem. 2014 Dec 5;289(49):34214-28. doi: 10.1074/jbc.M114.585489. Epub 2014 Oct 23.

Abstract

The extracellular protein HbpS from Streptomyces reticuli interacts with iron ions and heme. It also acts in concert with the two-component sensing system SenS-SenR in response to oxidative stress. Sequence comparisons suggested that the protein may bind a cobalamin. UV-visible spectroscopy confirmed binding (Kd = 34 μm) to aquo-cobalamin (H2OCbl(+)) but not to other cobalamins. Competition experiments with the H2OCbl(+)-coordinating ligand CN(-) and comparison of mutants identified a histidine residue (His-156) that coordinates the cobalt ion of H2OCbl(+) and substitutes for water. HbpS·Cobalamin lacks the Asp-X-His-X-X-Gly motif seen in some cobalamin binding enzymes. Preliminary tests showed that a related HbpS protein from a different species also binds H2OCbl(+). Furthermore, analyses of HbpS-heme binding kinetics are consistent with the role of HbpS as a heme-sensor and suggested a role in heme transport. Given the high occurrence of HbpS-like sequences among Gram-positive and Gram-negative bacteria, our findings suggest a great functional versatility among these proteins.

Keywords: Bioinformatics; Ligand-binding Protein; Metalloprotein; Microbiology; Spectroscopy.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Bacterial Proteins / chemistry*
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Binding Sites
  • Binding, Competitive
  • Biological Transport
  • Carrier Proteins / chemistry*
  • Carrier Proteins / genetics
  • Carrier Proteins / metabolism
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Evolution, Molecular
  • Gene Expression
  • Heme / chemistry*
  • Heme / metabolism
  • Heme-Binding Proteins
  • Hemeproteins / chemistry*
  • Hemeproteins / genetics
  • Hemeproteins / metabolism
  • Histidine / chemistry
  • Histidine / metabolism
  • Iron / metabolism
  • Kinetics
  • Models, Molecular
  • Molecular Sequence Data
  • Mutation
  • Protein Binding
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sequence Alignment
  • Soil Microbiology*
  • Streptomyces / chemistry*
  • Streptomyces / genetics
  • Streptomyces / metabolism
  • Structural Homology, Protein
  • Vitamin B 12 / analogs & derivatives*
  • Vitamin B 12 / chemistry
  • Vitamin B 12 / metabolism

Substances

  • Bacterial Proteins
  • Carrier Proteins
  • Heme-Binding Proteins
  • Hemeproteins
  • Recombinant Proteins
  • aquacobalamin
  • Heme
  • Histidine
  • Iron
  • Vitamin B 12

Associated data

  • PDB/2A2L
  • PDB/3FPV