Genetic analysis of 430 Chinese Cynodon dactylon accessions using sequence-related amplified polymorphism markers

Int J Mol Sci. 2014 Oct 21;15(10):19134-46. doi: 10.3390/ijms151019134.

Abstract

Although Cynodon dactylon (C. dactylon) is widely distributed in China, information on its genetic diversity within the germplasm pool is limited. The objective of this study was to reveal the genetic variation and relationships of 430 C. dactylon accessions collected from 22 Chinese provinces using sequence-related amplified polymorphism (SRAP) markers. Fifteen primer pairs were used to amplify specific C. dactylon genomic sequences. A total of 481 SRAP fragments were generated, with fragment sizes ranging from 260-1800 base pairs (bp). Genetic similarity coefficients (GSC) among the 430 accessions averaged 0.72 and ranged from 0.53-0.96. Cluster analysis conducted by two methods, namely the unweighted pair-group method with arithmetic averages (UPGMA) and principle coordinate analysis (PCoA), separated the accessions into eight distinct groups. Our findings verify that Chinese C. dactylon germplasms have rich genetic diversity, which is an excellent basis for C. dactylon breeding for new cultivars.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Breeding / methods
  • China
  • Cluster Analysis
  • Cynodon / genetics*
  • DNA, Plant / genetics*
  • Genetic Markers / genetics*
  • Genetic Variation / genetics*
  • Genome, Plant / genetics*
  • Phylogeny
  • Polymorphism, Genetic / genetics*
  • Sequence Analysis / methods

Substances

  • DNA, Plant
  • Genetic Markers