Structural aspects of intermolecular interactions in the solid state of 1,4-dibenzylpiperazines bearing nitrile or amidine groups

Acta Crystallogr B Struct Sci Cryst Eng Mater. 2014 Oct;70(Pt 5):820-7. doi: 10.1107/S2052520614013754. Epub 2014 Sep 18.

Abstract

The crystal structures of the title 1,4-bis(4-cyanobenzyl)piperazine (1) and 1,4-bis(4-amidinobenzyl)piperazine tetrahydrochloride tetrahydrate (2) are reported. Compound (1) crystallizes in the triclinic space group P\bar 1 and compound (2) in the monoclinic space group P21/n. In both (1) and (2) the asymmetric unit contains one half of the molecule because the central piperazine rings were located across a symmetry center. The packing of both molecules was dominated by hydrogen bonds. The crystal lattice of (1) was formed by weak C-H...N and C-H...π interactions. The crystal structure of (2) was completely different, with cations as well as chloride anions and water molecules taking part in intermolecular interactions. Single-crystal X-ray diffraction studies combined with density functional theory (DFT) calculations allowed the characterization of the intermolecular interactions in those two systems having different types of very strong electrophilic groups: non-ionic nitrile and ionic amidine. Chemical shift data from (13)C CP/MAS (Cross Polarization Magic Angle Spinning) NMR spectra were analyzed using the different procedures for the theoretical computation of shielding constants.

Keywords: density functional theory; pharmaceuticals; solid-state study; spanning X-ray diffraction.

MeSH terms

  • Amidines / chemistry
  • Crystallography, X-Ray
  • Hydrogen Bonding
  • Magnetic Resonance Spectroscopy / methods
  • Models, Chemical
  • Models, Molecular
  • Molecular Conformation
  • Nitriles / chemistry
  • Piperazines / chemistry*
  • Water

Substances

  • Amidines
  • Nitriles
  • Piperazines
  • Water