Metabolic role of 1,3-propanediol oxidoreductase (PDOR) in the production of 1,3-propanediol (1,3-PDO) with K. pneumonia was investigated by knocking out the coded gene dhaT. Fermentation with both the wide-type and mutant were studied in 5 l fermentor. A PDOR-deficient mutant K. pneumonia T1.9131 with 19% PDOR activity of the wild type was constructed. The cultures of the mutant indicated that PDOR inactivation had great effect on the other dha regulon enzymes: activity of glycerol dehydratase decreased by 70% while activity of glycerol dehydrogenase increased by 68%. Fed-batch fermentation showed that more metabolic flux of glycerol was directed to lactate and ethanol in the mutant. Lactate was identified as major metabolite and received an increase in the final concentration from 45 to 91 g l(-1), while the concentration of 1,3-PDO production dropped from 94 to 36 g l(-1). The results demonstrated PDOR was not indispensable in glycerol metabolism but was crucial in high 1,3-PDO productivity. It is postulated that a hypothetical oxidoreductase was expressed and replaced the function of PDOR. Blocking the pathway towards lactate and ethanol could be a plausible scheme to enhance 1,3-PDO productivity.