Archaeal Elp3 catalyzes tRNA wobble uridine modification at C5 via a radical mechanism

Nat Chem Biol. 2014 Oct;10(10):810-2. doi: 10.1038/nchembio.1610. Epub 2014 Aug 24.

Abstract

Approximately 25% of cytoplasmic tRNAs in eukaryotic organisms have the wobble uridine (U34) modified at C5 through a process that, according to genetic studies, is carried out by the eukaryotic Elongator complex. Here we show that a single archaeal protein, the homolog of the third subunit of the eukaryotic Elongator complex (Elp3), is able to catalyze the same reaction. The mechanism of action by Elp3 described here represents unprecedented chemistry performed on acetyl-CoA.

Publication types

  • Research Support, N.I.H., Extramural

MeSH terms

  • Amino Acid Sequence
  • Archaeal Proteins / chemistry
  • Archaeal Proteins / genetics
  • Archaeal Proteins / metabolism*
  • Biocatalysis
  • Conserved Sequence
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Free Radicals / chemistry
  • Free Radicals / metabolism
  • Gene Expression
  • Histone Acetyltransferases / chemistry
  • Histone Acetyltransferases / genetics
  • Histone Acetyltransferases / metabolism*
  • Methanocaldococcus / chemistry*
  • Methanocaldococcus / enzymology
  • Molecular Sequence Data
  • Nerve Tissue Proteins / chemistry
  • Nerve Tissue Proteins / genetics
  • Nerve Tissue Proteins / metabolism
  • Protein Structure, Tertiary
  • Protein Subunits / chemistry
  • Protein Subunits / genetics
  • Protein Subunits / metabolism*
  • RNA, Transfer / chemistry
  • RNA, Transfer / metabolism*
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • S-Adenosylmethionine / chemistry
  • S-Adenosylmethionine / metabolism
  • Saccharomyces cerevisiae Proteins / chemistry
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / metabolism
  • Structural Homology, Protein
  • Uridine / chemistry
  • Uridine / metabolism*

Substances

  • Archaeal Proteins
  • Free Radicals
  • Nerve Tissue Proteins
  • Protein Subunits
  • Recombinant Proteins
  • Saccharomyces cerevisiae Proteins
  • S-Adenosylmethionine
  • RNA, Transfer
  • ELP3 protein, human
  • Elp3 protein, S cerevisiae
  • Histone Acetyltransferases
  • Uridine