Transition-state structure for the quintessential SN2 reaction of a carbohydrate: reaction of α-glucopyranosyl fluoride with azide ion in water

J Am Chem Soc. 2014 Sep 3;136(35):12225-8. doi: 10.1021/ja506092h. Epub 2014 Aug 19.

Abstract

We report that the SN2 reaction of α-d-glucopyranosyl fluoride with azide ion proceeds through a loose (exploded) transition-state (TS) structure. We reached this conclusion by modeling the TS using a suite of five experimental kinetic isotope effects (KIEs) as constraints for the calculations. We also report that the anomeric (13)C-KIE is not abnormally large (k12/k13 = 1.024 ± 0.006), a finding which is at variance with the previous literature value (Zhang et al. J. Am. Chem. Soc. 1994, 116, 7557).

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Azides / chemistry*
  • Glucose / analogs & derivatives*
  • Glucose / chemistry
  • Ions / chemistry
  • Kinetics
  • Models, Molecular
  • Water / chemistry*

Substances

  • Azides
  • Ions
  • Water
  • glucosyl fluoride
  • Glucose